dmbiolib documentationΒΆ
Contents:
- Overview
- Installation
- Usage
- Latest news
- Functions
- aa_dist(seqs,parvrs,fname,r)
- aln2seq(filename,type,full,reference)
- check_file(filename,strict)
- check_plot_format(x)
- check_read_file(filename)
- check_seq(sequence,type,required)
- check_sync(read1,read2)
- complexity(sequence)
- compress(sequence):
- conf_start(title)
- conf_end(filename,content,title)
- csv_read(filename,dic,header)
- csv_write(filename,keys,list_or_dic,header,description,file_handle)
- detect_vr(libnt,mindist)
- diff(sequences)
- dirname()
- entropy(matrix)
- exprange(a,b,c)
- find_ambiguous(seq)
- find_read_files()
- findall(probe,seq,start,end,overlap=False)
- format_dna(seq,margin,cpl,cpn)
- frame(seq,strict=False)
- fsize(filename)
- getfasta(fname,type,required,multi)
- getread(f,y,counter)
- initreadfile(rfile)
- intorfloat(x)
- match(seq1, seq2)
- mean(x)
- mut_per_read(seqs,parseq,fname,r)
- nt_match(nt1, nt2)
- plot_end(fig,name,format,mppdf)
- plot_start(x,y,z)
- pr2(f,text)
- prefix(x)
- prod(x)
- progress_check(c,show,text)
- progress_end()
- progress_start(nr,text)
- readcount(R)
- rename(filename)
- revcomp(seq)
- rfile_create(filename)
- rfile_open(filename)
- seq_clust_card_dist(seqs,fname,r)
- seq_write(fname,top,seqs,dic,descr,r)
- shortest_probe(seqs,lim,host,t)
- size_dist(seqs,fname,r)
- sortfiles(l,str)
- transl(seq)
- xcount(f,x)